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Numerical studies of higher order tau-leaping methods

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posted on 2021-05-23, 12:36 authored by Anuj Dhoj Thapa
Gillespie's algorithm, also known as the Stochastic Simulation Algorithm (SSA), is an exact simulation method for the Chemical Master Equation model of well-stirred biochemical systems. However, this method is computationally intensive when some fast reactions are present in the system. The tau-leap scheme developed by Gillespie can speed up the stochastic simulation of these biochemically reacting systems with negligible loss in accuracy. A number of tau-leaping methods were proposed, including the explicit tau-leaping and the implicit tau-leaping strategies. Nonetheless, these schemes have low order of accuracy. In this thesis, we investigate tau-leap strategies which achieve high accuracy at reduced computational cost. These strategies are tested on several biochemical systems of practical interest.

History

Language

English

Degree

  • Master of Science

Program

  • Applied Mathematics

Granting Institution

Ryerson University

LAC Thesis Type

  • Thesis

Year

2018

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    Applied Mathematics (Theses)

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